PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 526aa    MW: 58953.7 Da    PI: 6.8024
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17164213155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009780790.1 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213
                     78*******************......55************************997 PP

2AP242.81.3e-13256306155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  XP_009780790.1 256 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 306
                     89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-15164222IPR016177DNA-binding domain
PfamPF008476.2E-9164213IPR001471AP2/ERF domain
PROSITE profilePS5103217.596165221IPR001471AP2/ERF domain
CDDcd000183.27E-11165220No hitNo description
SMARTSM003805.3E-32165227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-17165221IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-17256316IPR016177DNA-binding domain
CDDcd000182.19E-25256316No hitNo description
PfamPF008473.5E-9256306IPR001471AP2/ERF domain
SMARTSM003806.8E-32257320IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16257314IPR001471AP2/ERF domain
PROSITE profilePS5103215.672257314IPR001471AP2/ERF domain
PRINTSPR003676.3E-6258269IPR001471AP2/ERF domain
PRINTSPR003676.3E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MECREMWDLN DSPDRRRDDK SEEGFSSPIE LEGDDEKGKR VGSVSNSSSS AVAIDDISEE  60
EEGEKGKKKR SSPSKIFGFS VVGPGNDDEE QPVTRQFFPV DESEPGAPTN GSPNFPMAHW  120
VEVKFYQTEP LGNTGAGKPM DVAQQQQQQQ PMKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NLEDYESDLK QMTNLTKEEF  240
VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA  300
AIKCNGKDAV TNFDLSIYEN ELNSTESTDN AADHNLDLSL GGSSSKQGNR EIGDNNNRGQ  360
NPSSMQFDVD WRQQGLRPEK QTAPIDMNAR RRDKGYNESE TLQLLSQTHL HSPVSLKPNN  420
NSQVQRFGQF MRPGESHMIQ MFPHQFSSSN YQIQFPSGSN GGRIGATNVG EISLSTSNAS  480
SQWQSNYPSQ IFAAAAASSG FPQQIVRPQN WSSENGFHHS LMRPSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780790.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotP479271e-129AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A097BTY80.0A0A097BTY8_TOBAC; AP2 transcription factor SlAP2c
STRINGPGSC0003DMT4000102310.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-123AP2 family protein